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<?xml version="1.0"?>
<!DOCTYPE Seq-entry PUBLIC "-//NCBI//NCBI Seqset/EN" "NCBI_Seqset.dtd">
<Seq-entry>
<Seq-entry_set>
<Bioseq-set>
<Bioseq-set_class value="nuc-prot"/>
<Bioseq-set_descr>
<Seq-descr>
<Seqdesc>
<Seqdesc_source>
<BioSource>
<BioSource_org>
<Org-ref>
<Org-ref_taxname>Hepatitis C virus</Org-ref_taxname>
<Org-ref_db>
<Dbtag>
<Dbtag_db>taxon</Dbtag_db>
<Dbtag_tag>
<Object-id>
<Object-id_id>11103</Object-id_id>
</Object-id>
</Dbtag_tag>
</Dbtag>
</Org-ref_db>
<Org-ref_orgname>
<OrgName>
<OrgName_name>
<OrgName_name_virus>Hepatitis C virus</OrgName_name_virus>
</OrgName_name>
<OrgName_mod>
<OrgMod>
<OrgMod_subtype value="subtype">5</OrgMod_subtype>
<OrgMod_subname>2b</OrgMod_subname>
</OrgMod>
<OrgMod>
<OrgMod_subtype value="isolate">17</OrgMod_subtype>
<OrgMod_subname>P1</OrgMod_subname>
</OrgMod>
</OrgName_mod>
<OrgName_lineage>Viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Hepacivirus</OrgName_lineage>
<OrgName_gcode>1</OrgName_gcode>
<OrgName_div>VRL</OrgName_div>
</OrgName>
</Org-ref_orgname>
</Org-ref>
</BioSource_org>
</BioSource>
</Seqdesc_source>
</Seqdesc>
<Seqdesc>
<Seqdesc_pub>
<Pubdesc>
<Pubdesc_pub>
<Pub-equiv>
<Pub>
<Pub_sub>
<Cit-sub>
<Cit-sub_authors>
<Auth-list>
<Auth-list_names>
<Auth-list_names_std>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Ross</Name-std_last>
<Name-std_first>Stefan</Name-std_first>
<Name-std_initials>S.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Viazov</Name-std_last>
<Name-std_first>Sergei</Name-std_first>
<Name-std_initials>S.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Roggendorf</Name-std_last>
<Name-std_first>Michael</Name-std_first>
<Name-std_initials>M.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
</Auth-list_names_std>
</Auth-list_names>
<Auth-list_affil>
<Affil>
<Affil_std>
<Affil_std_affil>Institute of Virology</Affil_std_affil>
<Affil_std_div>Essen University Hospital</Affil_std_div>
<Affil_std_city>Essen</Affil_std_city>
<Affil_std_country>Germany</Affil_std_country>
<Affil_std_street>Hufelandstr. 55</Affil_std_street>
<Affil_std_postal-code>D-45122</Affil_std_postal-code>
</Affil_std>
</Affil>
</Auth-list_affil>
</Auth-list>
</Cit-sub_authors>
<Cit-sub_medium value="email"/>
<Cit-sub_date>
<Date>
<Date_std>
<Date-std>
<Date-std_year>2001</Date-std_year>
<Date-std_month>6</Date-std_month>
<Date-std_day>13</Date-std_day>
</Date-std>
</Date_std>
</Date>
</Cit-sub_date>
</Cit-sub>
</Pub_sub>
</Pub>
</Pub-equiv>
</Pubdesc_pub>
</Pubdesc>
</Seqdesc_pub>
</Seqdesc>
<Seqdesc>
<Seqdesc_pub>
<Pubdesc>
<Pubdesc_pub>
<Pub-equiv>
<Pub>
<Pub_gen>
<Cit-gen>
<Cit-gen_cit>Unpublished</Cit-gen_cit>
<Cit-gen_authors>
<Auth-list>
<Auth-list_names>
<Auth-list_names_std>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Ross</Name-std_last>
<Name-std_first>Stefan</Name-std_first>
<Name-std_initials>S.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Viazov</Name-std_last>
<Name-std_first>Sergei</Name-std_first>
<Name-std_initials>S.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
<Author>
<Author_name>
<Person-id>
<Person-id_name>
<Name-std>
<Name-std_last>Roggendorf</Name-std_last>
<Name-std_first>Michael</Name-std_first>
<Name-std_initials>M.</Name-std_initials>
</Name-std>
</Person-id_name>
</Person-id>
</Author_name>
</Author>
</Auth-list_names_std>
</Auth-list_names>
</Auth-list>
</Cit-gen_authors>
<Cit-gen_title>Provider-to-patient transmission of HCV by a surgeon</Cit-gen_title>
</Cit-gen>
</Pub_gen>
</Pub>
</Pub-equiv>
</Pubdesc_pub>
</Pubdesc>
</Seqdesc_pub>
</Seqdesc>
</Seq-descr>
</Bioseq-set_descr>
<Bioseq-set_seq-set>
<Seq-entry>
<Seq-entry_seq>
<Bioseq>
<Bioseq_id>
<Seq-id>
<Seq-id_genbank>
<Textseq-id>
<Textseq-id_name>AF390574</Textseq-id_name>
<Textseq-id_accession>AF390574</Textseq-id_accession>
<Textseq-id_version>1</Textseq-id_version>
</Textseq-id>
</Seq-id_genbank>
</Seq-id>
<Seq-id>
<Seq-id_gi>15991499</Seq-id_gi>
</Seq-id>
</Bioseq_id>
<Bioseq_descr>
<Seq-descr>
<Seqdesc>
<Seqdesc_molinfo>
<MolInfo>
<MolInfo_biomol value="genomic">1</MolInfo_biomol>
</MolInfo>
</Seqdesc_molinfo>
</Seqdesc>
<Seqdesc>
<Seqdesc_title>Hepatitis C virus isolate P1 envelope protein 2, hypervariable region 1 gene, partial cds.</Seqdesc_title>
</Seqdesc>
<Seqdesc>
<Seqdesc_create-date>
<Date>
<Date_std>
<Date-std>
<Date-std_year>2001</Date-std_year>
<Date-std_month>10</Date-std_month>
<Date-std_day>10</Date-std_day>
</Date-std>
</Date_std>
</Date>
</Seqdesc_create-date>
</Seqdesc>
<Seqdesc>
<Seqdesc_update-date>
<Date>
<Date_std>
<Date-std>
<Date-std_year>2001</Date-std_year>
<Date-std_month>10</Date-std_month>
<Date-std_day>10</Date-std_day>
</Date-std>
</Date_std>
</Date>
</Seqdesc_update-date>
</Seqdesc>
</Seq-descr>
</Bioseq_descr>
<Bioseq_inst>
<Seq-inst>
<Seq-inst_repr value="raw"/>
<Seq-inst_mol value="rna"/>
<Seq-inst_length>81</Seq-inst_length>
<Seq-inst_seq-data>
<Seq-data>
<Seq-data_iupacna>
<IUPACna>CACACCCTTACTACTGGTGGACAAGCGGCTCGATACACTCAGGGGTTCACCGGTTTTTTTAGCCCTGGCGCCAAGCAAAAT</IUPACna>
</Seq-data_iupacna>
</Seq-data>
</Seq-inst_seq-data>
</Seq-inst>
</Bioseq_inst>
</Bioseq>
</Seq-entry_seq>
</Seq-entry>
<Seq-entry>
<Seq-entry_seq>
<Bioseq>
<Bioseq_id>
<Seq-id>
<Seq-id_genbank>
<Textseq-id>
<Textseq-id_accession>AAL12903</Textseq-id_accession>
<Textseq-id_version>1</Textseq-id_version>
</Textseq-id>
</Seq-id_genbank>
</Seq-id>
<Seq-id>
<Seq-id_gi>15991500</Seq-id_gi>
</Seq-id>
</Bioseq_id>
<Bioseq_descr>
<Seq-descr>
<Seqdesc>
<Seqdesc_molinfo>
<MolInfo>
<MolInfo_biomol value="peptide">8</MolInfo_biomol>
<MolInfo_tech value="concept-trans">8</MolInfo_tech>
<MolInfo_completeness value="no-ends">5</MolInfo_completeness>
</MolInfo>
</Seqdesc_molinfo>
</Seqdesc>
<Seqdesc>
<Seqdesc_create-date>
<Date>
<Date_std>
<Date-std>
<Date-std_year>2001</Date-std_year>
<Date-std_month>10</Date-std_month>
<Date-std_day>10</Date-std_day>
</Date-std>
</Date_std>
</Date>
</Seqdesc_create-date>
</Seqdesc>
</Seq-descr>
</Bioseq_descr>
<Bioseq_inst>
<Seq-inst>
<Seq-inst_repr value="raw"/>
<Seq-inst_mol value="aa"/>
<Seq-inst_length>27</Seq-inst_length>
<Seq-inst_seq-data>
<Seq-data>
<Seq-data_ncbieaa>
<NCBIeaa>HTLTTGGQAARYTQGFTGFFSPGAKQN</NCBIeaa>
</Seq-data_ncbieaa>
</Seq-data>
</Seq-inst_seq-data>
</Seq-inst>
</Bioseq_inst>
<Bioseq_annot>
<Seq-annot>
<Seq-annot_data>
<Seq-annot_data_ftable>
<Seq-feat>
<Seq-feat_data>
<SeqFeatData>
<SeqFeatData_prot>
<Prot-ref>
<Prot-ref_name>
<Prot-ref_name_E>envelope protein 2</Prot-ref_name_E>
</Prot-ref_name>
<Prot-ref_desc>hypervariable region 1</Prot-ref_desc>
</Prot-ref>
</SeqFeatData_prot>
</SeqFeatData>
</Seq-feat_data>
<Seq-feat_partial value="true"/>
<Seq-feat_location>
<Seq-loc>
<Seq-loc_int>
<Seq-interval>
<Seq-interval_from>0</Seq-interval_from>
<Seq-interval_to>26</Seq-interval_to>
<Seq-interval_strand>
<Na-strand value="plus"/>
</Seq-interval_strand>
<Seq-interval_id>
<Seq-id>
<Seq-id_gi>15991500</Seq-id_gi>
</Seq-id>
</Seq-interval_id>
<Seq-interval_fuzz-from>
<Int-fuzz>
<Int-fuzz_lim value="lt"/>
</Int-fuzz>
</Seq-interval_fuzz-from>
<Seq-interval_fuzz-to>
<Int-fuzz>
<Int-fuzz_lim value="gt"/>
</Int-fuzz>
</Seq-interval_fuzz-to>
</Seq-interval>
</Seq-loc_int>
</Seq-loc>
</Seq-feat_location>
</Seq-feat>
</Seq-annot_data_ftable>
</Seq-annot_data>
</Seq-annot>
</Bioseq_annot>
</Bioseq>
</Seq-entry_seq>
</Seq-entry>
</Bioseq-set_seq-set>
<Bioseq-set_annot>
<Seq-annot>
<Seq-annot_data>
<Seq-annot_data_ftable>
<Seq-feat>
<Seq-feat_data>
<SeqFeatData>
<SeqFeatData_cdregion>
<Cdregion>
<Cdregion_frame value="one"/>
<Cdregion_code>
<Genetic-code>
<Genetic-code_E>
<Genetic-code_E_id>1</Genetic-code_E_id>
</Genetic-code_E>
</Genetic-code>
</Cdregion_code>
</Cdregion>
</SeqFeatData_cdregion>
</SeqFeatData>
</Seq-feat_data>
<Seq-feat_partial value="true"/>
<Seq-feat_product>
<Seq-loc>
<Seq-loc_whole>
<Seq-id>
<Seq-id_gi>15991500</Seq-id_gi>
</Seq-id>
</Seq-loc_whole>
</Seq-loc>
</Seq-feat_product>
<Seq-feat_location>
<Seq-loc>
<Seq-loc_int>
<Seq-interval>
<Seq-interval_from>0</Seq-interval_from>
<Seq-interval_to>80</Seq-interval_to>
<Seq-interval_strand>
<Na-strand value="plus"/>
</Seq-interval_strand>
<Seq-interval_id>
<Seq-id>
<Seq-id_gi>15991499</Seq-id_gi>
</Seq-id>
</Seq-interval_id>
<Seq-interval_fuzz-from>
<Int-fuzz>
<Int-fuzz_lim value="lt"/>
</Int-fuzz>
</Seq-interval_fuzz-from>
<Seq-interval_fuzz-to>
<Int-fuzz>
<Int-fuzz_lim value="gt"/>
</Int-fuzz>
</Seq-interval_fuzz-to>
</Seq-interval>
</Seq-loc_int>
</Seq-loc>
</Seq-feat_location>
</Seq-feat>
</Seq-annot_data_ftable>
</Seq-annot_data>
</Seq-annot>
</Bioseq-set_annot>
</Bioseq-set>
</Seq-entry_set>
</Seq-entry>
Revised: October 24, 2001.